Scaffold Ga0111538_10365261

Overview

Basic Information

• Taxon OID: 3300009156
• Scaffold ID: Ga0111538_10365261
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1827
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008693	Metagenome / Metatranscriptome	329	Y
F016613	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111538_103652611	F016613	AGGAGG	MSLLQQIIDGSLVSRERLMQSREFYAPSEKKAPARVALARWTNRVLEQPALGVARELAGLSEPELDELEAEFRRCPMRQPPQWVRYAVVVGIVLMALAGLGLGLQASTSLGEAAGRTLQAASVACLLIGLLPLGVGLISALGGLQLDLSYGTVGLYVGKLDEQHPWLYDARSLTKHGIAEEYRQRTLHERGLLRGADFVMMRELVQAQEALARVRAARSVAEQFQSLPVAAQAIVHEPRLVRVSAARDHREPLNAEMSRARP*
Ga0111538_103652614	F008693	N/A	MQGPRKFVEYWRWRYRDPKTGRVCRTLFQLSEREAAELPEAERIEGSMLLREVDGDDFPDTGPEVHRLSPESPQSP*