Scaffold Ga0114968_10089699

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10089699
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1895
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F064403	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100896992	F027756	GGAG	MKLEDLIDRKILYLNYPINKYAIQEGKVTEISPAKMCIKINADWHLISNIRIIELFSEKERPALGFN*
Ga0114968_100896994	F036564	GGAG	MKLGRVTLDINYIVDMDNEDMVKHAIESLYEDLMQGVKYGNITDWIDVVEDKNATEDMIPEFLLEKEND*
Ga0114968_100896995	F064403	GGAG	MTNPRSKILSVLKRAYLKVHPISLVDRILGYLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF*
Ga0114968_100896996	F044916	N/A	MGRKKIEKSRIEKGLEKEEKTFGLMAKKIIDAIKDEKELRAFAKTSLEILYKDNPNLFADHAKLKLKKK*