Scaffold Ga0114968_10084144

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10084144
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1972
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034183	Metagenome	175	Y
F043402	Metagenome	156	Y
F066782	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100841442	F066782	GAG	MNEEILKKLGYNTIALEMLLKREAQINPEDILMPGERPSINKDPSLNDLSSDVKSDVRNILNKLEEVERLINDLPEYTLAEEEYDEDVRAFPMHKRYAKDELENLMEEIKLLLKYA*
Ga0114968_100841444	F043402	GAG	MIDKFKELVEELDEKESSNLIIILSSLLEAWEDDKINLYSEIQDFELTTIYKVLNLFNEQAEDAS*
Ga0114968_100841445	F034183	AGG	MNKLKTLAENINEEEAALIFQLLLSAFETANYQKVQYTNEDLPDEASLMINVELNTKNVPARVIEKLL