Basic Information | |
---|---|
Taxon OID | 3300009155 Open in IMG/M |
Scaffold ID | Ga0114968_10084144 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1972 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F034183 | Metagenome | 175 | Y |
F043402 | Metagenome | 156 | Y |
F066782 | Metagenome | 126 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114968_100841442 | F066782 | GAG | MNEEILKKLGYNTIALEMLLKREAQINPEDILMPGERPSINKDPSLNDLSSDVKSDVRNILNKLEEVERLINDLPEYTLAEEEYDEDVRAFPMHKRYAKDELENLMEEIKLLLKYA* |
Ga0114968_100841444 | F043402 | GAG | MIDKFKELVEELDEKESSNLIIILSSLLEAWEDDKINLYSEIQDFELTTIYKVLNLFNEQAEDAS* |
Ga0114968_100841445 | F034183 | AGG | MNKLKTLAENINEEEAALIFQLLLSAFETANYQKVQYTNEDLPDEASLMINVELNTKNVPARVIEKLL |
⦗Top⦘ |