Scaffold Ga0114968_10073456

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10073456
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2139
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003379	Metagenome / Metatranscriptome	490	Y
F092052	Metagenome / Metatranscriptome	107	Y
F093318	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100734562	F093318	AGTAGG	MQIQYVSKYIALSEEGLVPRLECPMDQGPLFPNQDGEDKVFIYCLSCEYKKFLGTKDYDDIVRAVENAR*
Ga0114968_100734563	F092052	GGCGG	MLDECKNGQCACEQEENFFHVKVIPQNSAKISAAGEESFSSYEFEATTLLEKDSMGREIFWNDMGRP*
Ga0114968_100734565	F003379	AGAAG	MKKIQRKTKSISALVMLIATAILSGVALSKFLKWAGQMEIFDFDLDEDIDKEDL*