Scaffold Ga0114968_10032760

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10032760
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3467
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008402	Metagenome / Metatranscriptome	334	Y
F013514	Metagenome / Metatranscriptome	270	Y
F018913	Metagenome / Metatranscriptome	232	Y
F053262	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1003276010	F013514	GGA	MIMNLEEIQKFLDDNNTTLEEYLRENMITDEDRKYVNKIWVDAIYNNFGDDT*
Ga0114968_1003276011	F008402	N/A	MTIEITNQVRIQEHTDFWYTVEDTHLDVGFEGCTISYWELPSGVNTSEKRVNHICMEKEEALAVADAIYKLFKKN*
Ga0114968_100327602	F053262	N/A	MTELTQEQRQTIEDSFNSIPEVAKRGMYGTMEGIEEQLTRGDKIIFYMRPHKVPGGLYIDKMKVGEE*
Ga0114968_100327606	F018913	AGGAG	MTTNKEKAEELLKVICKSEAHNTAWMLQEVLQHLRKQLSGNNVLDFYDEQGMMYNYGWDDCLKEIDAICDELELL*