Scaffold Ga0114968_10027245

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10027245
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3867
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001424	Metagenome / Metatranscriptome	698	Y
F003662	Metagenome / Metatranscriptome	474	Y
F011843	Metagenome	286	Y
F035676	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100272453	F035676	N/A	MKSNFVNNPVRLNGNCHGHRLQKCNACLVEKPPEGGVEMSATRWLCASCWTNRITGRNLKQVRGL*
Ga0114968_100272454	F011843	GGA	MNTQMLIKVRQLFNVDYVPRSTNRHNQLQYVKAIRLLGDKWLIHQNNKITKIQ*
Ga0114968_100272455	F003662	GGAG	MKSKLATVVFKGQEWIVIDSDEEKDGKLFCTLMSPDGSTVLHAWVDINQIVGII*
Ga0114968_100272458	F001424	AGGA	MHRLSTIDEMVEDERVFCQNCANAEMVEQHQSMPAEQMERHRKVNAKPLQWMFDQAKVRGGWATVTWSEHQCGRTGLAAFPTDVKHRCHMFQAKATAVESEAWWLT*