Scaffold Ga0114968_10023582

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10023582
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4206
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F065721	Metagenome / Metatranscriptome	127	Y
F069714	Metagenome	123	N
F082173	Metagenome	113	Y
F094887	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1002358210	F094887	AGGAG	MEKELKEIDEAITSLWWGAEISDKAKLWWNDHYQEIVERELAK*
Ga0114968_1002358211	F069714	GAG	MNITINESYMPEYTKAITFECEGEEYLAEVYVSKNCSDYNLYQGNKKLEDKPAWLKKAEEDDEFSFLFFIDDLAWEYEQRKERV*
Ga0114968_100235822	F082173	AGGAGG	MSKVIKTHTLLADKSGAVWVEAELSEAEVKRLIKGYKRQNIWLTAYGSPNQLIAQLRELEGAF*
Ga0114968_100235827	F065721	AGGAG	MTKYVANENGDWWEVVEGASLYLIDTEWENIASKMEEERSTPNDDKFERFIWRYGTEVDIDMSRWVKV*
Ga0114968_100235828	F006618	AGGTGG	MSKVKQHLEQQINITGKCHEETGWKRRLDFQYEGNDYQLTLYWSEFDGYDIVWRFCNGKQMINTPAWVVEWDSEAHQGMSFEHYLDELTYEMEWK*