Scaffold Ga0114968_10023568

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10023568
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4207
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F027777	Metagenome / Metatranscriptome	193	N
F074559	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100235684	F074559	N/A	MKAQNPWQKLLQEHIKDKFAPPPPPGYHTREEVSKLWQKSMNTTSRMLSQMLLEKKVDMKRHPFIIPRKDHRVVRNLKIYKIIPTKSPRK*
Ga0114968_100235686	F005846	N/A	MTSFPLPARPVGSAVPALHDEFSEGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGSGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDLQPNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPSYCSPAWQKQRIRW*
Ga0114968_100235689	F027777	AGGA	MSEELPTFWHQEPAMKKLPNETTDEWVVRVFGAFPDTEFDQRNDFRCLNLPKTQKENAEGFGVFDDGQNKQ*