NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10020098

Scaffold Ga0114968_10020098


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10020098 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4604
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F001125Metagenome / Metatranscriptome769Y
F023344Metagenome / Metatranscriptome210Y
F047059Metagenome / Metatranscriptome150Y
F053291Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1002009810F000311GAGMYFELTAPDRLSMEMAYWDAQITGLDPEAMSPLTFNIGTGSIEKVSRLRDKYNLTESYVSEYETTGY*
Ga0114968_100200982F047059N/AMEYLKIHKISLEQDLEDARNNVPLNEDEYFESDAYYTGAIDTMEHILSVASDIMIDNERVY*
Ga0114968_100200984F053291GGAGMITIQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMIKYMEAMEC*
Ga0114968_100200985F023344AGGCGGMEAFTDTVGEHILGAIQVDIEQALFEDWNQSNLDEGEEFAEYKFMQFAPLTLKQSYNEYYGYKEGDEFFL*
Ga0114968_100200987F001125GGCGGMGDRANFGFRDSKENVVFLYGHWAGYNMLAKLANAVQAAEPRWQDESYATRIAISNLIGEDWTEKTGWGIYINQLGDNEHKVPVIDWTNQTFTLYEEDLSTVVFTSSLAAFVDKYSRLVMV*
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