Scaffold Ga0114968_10019418

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10019418
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4693
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F020513	Metagenome	223	Y
F027490	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100194181	F020513	AGGA	MLDKQNIVVDGIESPTGTSDIVRKVAHEIYVKMVDYLRLTQSKNTYNRFSDYHYLNIPVSNSTEPIRGIDYIHPIVAPGVDYATAIATKCLMPNGKVEFEFERFTEQDSEQARQATEMVKYMINSKNDSYQVIRDWSQDAFLHKNGIVMVSPVREPVTQYKKVEGTRDQLKSFEIMAGEKGLTAKRQNMRKIDVDLQGAMQETMQAAEAGMDVEDPNEALGDSLKANTIYRAEYKLTGYSTTVRIKHVAQHYFVCNPTIPRIQDQDFCGFYDPMTIHEAKEQFPYIDMEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRFSRVVMLTTAWLRRDIDNDGDEELIECCFSGSYVLYVKEVDFIPLANMCPKPITGNFFGYSLAERLVPMQEYATSICRAEMAFAMQASTPRIGVNPEFVDAEEIQRGVSALFILDRKFDPAKHVYEFGAMQGNLAYVQSAMQRFEADKMAMIGMTSPNDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEM
Ga0114968_100194184	F001059	GGAG	MATYDIEALKADLPTAKDLAQFVFDRTGISLDLIGKSKDDQYQVAKNALEGKKVPTEFATDLNPYIDKKDLIPVDEVRKLPPRSLDLPDIDSRVHFFGAFNMPHPNDPQGDKKVQINFWKYDNGLITYQIMGPLEQYPVGEKINRYGQTVPEKYSWLDPRTEELVLRRPDGTYTEKGRGLYAFCSGEKGSGLWTMIDRNIMSVAAKNITDPWA*
Ga0114968_100194187	F027490	GAG	MNSYGRVISGGAQMRKGLTENINNKVEGHNSDLKRKEVIATAVNNAYKVNTVSSQHTNDVKNFGKFTKPSVPKRT*