Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10019309 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10019309 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4712
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4712

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030060	Metagenome	186	N
F081046	Metagenome	114	N
F086811	Metagenome	110	N
F088509	Metagenome	109	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100193091	F030060	N/A	MTKGIVTSESPEIHWQHLNVAGGRVLDLGCAFWTETERQEANGTTKYFLSQKPEFYMGVDINQGDINTLSQQYPQGKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLKEFMDWFDSIGFECYRHDSVSFCAEISVIYGRLKC*
Ga0114968_100193093	F081046	GAG	MTPKTIKYSQRLGDIIRCLPACKYLADQDHEVFVDCLPQYHGIFEMVSYAKVGSKGDVIDLEIWPNKYQEYRFSNKTWTEFVYSHPAINKADPTNILFDKLDDKPAKGLPAEYNMVAPFGISQGHKRDPLQIIVEARKKCGENNFFVLCPPGMEINGLQTYTAPNIPDMARAIRGAGEFWSIDSGQMAIAAGVRKESKVVYFPQTNAPFDKDNIFIWDSVELN*
Ga0114968_100193095	F088509	N/A	MTSIERQLEESLATALAGVSGVNIYKSDTKGARLLPSLVIQASIGSEEIIPYSGVFRCPATIIYATRADRTTRTVFDSKFQDILQVMYQSPSLASVLTTATLKVFLANVTSESPEIKSENRTWSKSLFLDISCTSI*
Ga0114968_100193096	F086811	N/A	MITPQFKVEDALARLLTPISGLNVLVSNRTGSRLFPFVTIKASLGKQYIVPYSGVFEVSAEINYSDSAAKATQAEFDATYYNVFSSLYSPTLTLAEKVQDKVTDLKIFMGRITSQSPTIRADKRAWQRGLTLSFVVTPDTTADGTRNYDFSDFLNSFYLGTI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10019309

Overview

Ecosystem & Geography

Associated Families

Sequences