Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10019274 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10019274 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4715
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4715

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013759	Metagenome / Metatranscriptome	268	Y
F014137	Metagenome / Metatranscriptome	265	Y
F017485	Metagenome	240	Y
F017826	Metagenome / Metatranscriptome	238	Y
F019136	Metagenome / Metatranscriptome	231	Y
F022884	Metagenome / Metatranscriptome	212	Y
F103248	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1001927410	F013759	N/A	MTIKQSSMKLEFGLSVFSRSETLLGLEITTHNGIMVGEDHDLYDQRIVEFSIGIIIAIFTIGFVSKGQKLDTPDMDNVQRAMKAFESELDK*
Ga0114968_1001927412	F017485	N/A	MSKKTIIEAVGFILMVVTILTLLCVLYEVNELKELTKDANNFRSIVNRK*
Ga0114968_100192743	F022884	N/A	MLTINNLDKIVRYPIGYTFRVKSMVLGHTNYHISLIDGKGGCRDLKLNRIKGRRGLYKLSYGNYLLHLKFSDIHNLDLFCAQIKQLIIFHVNN*
Ga0114968_100192744	F103248	N/A	MLTIKNIDKIINITSPLPYKWYISAVDELPDDLYGFSVYINDLIVITFYLNRESQYMSGRNEPVYRLYKNFDQSKINRWLSLHQISPYVIKQLINEMLNQ*
Ga0114968_100192745	F014137	N/A	MLTIKNIQTIIGQEYNDVFNIIGVKEHKDHYEFTLGYDATIKPAVETILLHRKQTDNGMYIMEYNNKTLWLNTNEFDTTDKIIICMQTI*
Ga0114968_100192748	F019136	N/A	MSLTIKNYKKLENWSHQYKEFTIGEVVEFETEYLFYVAYNSTPYIIKIFRQGTSTIEYEMVLRDGAGITQYGREWIKGRKLKSFELTALIFEALIVRFKPKAQTQMNNNINYFPS*
Ga0114968_100192749	F017826	N/A	MDKLKRVWNVVCVPTAFFLGAINMWIGETAVGCMFILFATNETINNDNKTK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10019274

Overview

Ecosystem & Geography

Associated Families

Sequences