Scaffold Ga0114968_10017625

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10017625
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4965
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F007579	Metagenome	348	Y
F008130	Metagenome	338	N
F021105	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1001762513	F021105	N/A	MRNPNDEYDRLHDHMTAIARERDHAVRQIDALTKQLEELKDALVLAHEALRREMP*
Ga0114968_100176253	F007579	GAGG	MSTPTTAEINTQIGNATRELAPGTTWKYNEPGDGYYCLEWMDDPKLQPTEAATMAKATELAANAVG*
Ga0114968_100176257	F008130	AGGGGG	MADAKTYVYEVYTTRLDTEQMVLIQIFRDPDNGQVLHAQLAFKNAIGDSWGTPYQLEKK*
Ga0114968_100176259	F000722	N/A	MTDTPHPETGISQETRESMYPDNYSDKMGKAFMHVVDEILKPVRPVDRLDDHSILLDELVLMYDAHMTIGGQQNRFNASVIRAAINVIKAL*