Scaffold Ga0114968_10016246

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10016246
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5209
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014606	Metagenome	261	Y
F016125	Metagenome	249	N
F026503	Metagenome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100162466	F014606	AGCAG	MSTRTNIRTATANALTGALVVPTANILRGRNNTIASISFPAAAVYAVSEQIEVRTLGPSNRTQYRQLQLIVDYFTAESGTYLIDDLFDTGSAAVEAAVLTDVTLGGQCRDLHLTSVDYVIEPDEDRRFGTARHTFNCIYLTTD*
Ga0114968_100162467	F026503	N/A	MIDIETSFSRLEYQLARLADAAKVDLGLVIKEEAKYAIQTIVKFTPPKSKQQGANAVRADFSRLAEPLVFETLQANATKGGFYKSMARYVRNRDVEKLRALFRNPNLTHYYGRPLLENEDAIKKYHKEQRNDRGRIRGKPRILAFGSDFRRIRSIMEDRVGWTVSGWNASAKVTGARYKKFSDKLKAQAGGNIRFGSVQSSFGPQPFIKATAHNVKIPNYQRMIDAAINSRVRTTAKKVAAVLANRAVNLGFTRVGGAMPIKTAAA*
Ga0114968_100162468	F016125	AGGAGG	MAAVRDFDPTQINSDFSAILLQAGVAFTYQGVSVTGIWSSSRDAFSEFEDQRRTDSKFTVFLLTSSVSATPQVTQTLSRSSITYFIERVTLDAEGAGCEIEVCKSI*