Scaffold Ga0114968_10015202

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10015202
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5412
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010236	Metagenome / Metatranscriptome	306	Y
F015467	Metagenome	254	Y
F023588	Metagenome	209	N
F024783	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100152024	F010236	AGAAG	MKKLQDVAGRIVAVFLSSALAIVGGSAVIAPELQIWKSAVLAGFAACATVVQKLAQSSLDGNLTMEEINDAFGAKKK*
Ga0114968_100152026	F024783	N/A	MDWGIVVAALVTAVGGIITSLLMLVRKENTEDHARVVGALEVLSGNVKSVGAKLDSHIDWHLKGTTNGETIAGNKVTKPKRNLKA*
Ga0114968_100152028	F023588	N/A	MSQAMVLVTWADAHSGVESWTPIDALDKDEMIVSTCGFLLATCDGGKPNHITVYQSRTVDDDIDHVLHIPCAMVRHIAICTPDELG*
Ga0114968_100152029	F015467	GGA	MRRITATIVTTLTLLIGIGTAHAVQAPKPTHSPSVNRTEVIPREAQPNIVFRHGDISWLPQLAQQAGWPPKTWRRLGEIILRESGGCPNRRGGDIVNKNCEVIGFDGSNHRSDTSLLQINGVNYDPKRNKYAPICTQMKICTQEPLLDALTNLKAGLLLFRATGSDWSPWIVPEGGW*