Scaffold Ga0114968_10014802

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10014802
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5494
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F015420	Metagenome / Metatranscriptome	255	Y
F019928	Metagenome / Metatranscriptome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1001480210	F004234	N/A	MNFIDLYKRDNTYFSNWTTDYDSTVYIAGTIEPFTYNAEETDGEWLSMFILNDANLNLLKSKL*
Ga0114968_1001480211	F003327	N/A	MTEFTQLAREVQDAIANGEYTHQKYLQFREWYFQNYEGSKRNANRDFRMFDLMYGLDVPIKNNDNEDI*
Ga0114968_1001480212	F003299	N/A	MKIYKVVFKTFDYWGGPIKLVTRILEAYDADHVKQLIQKNDDLILLIEEV*
Ga0114968_100148023	F019928	N/A	MKHSGVLSIIVFSTGYLTGIALVCEPALYLKLAGASIIGYLSFILALQMEGEQ*
Ga0114968_100148026	F001808	N/A	MMRYLAIILLLSSCSAQYHLNKAIKKGYTCEQTGDTIRITTLDSIPVIIHDSIVWEKFITTKDTIIKYNTVYVPKTRLEKKIEYKLKVKTIYKDRIVEKAQAKATRPRTRGNLNLLFVGVGIGLLLSYLFKFAREKYLF*
Ga0114968_100148029	F015420	N/A	MKKLINYFTPVGAEEIAIAKAFVIVTSVTLSILFLFTFLELIL*