Scaffold Ga0114968_10012674

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10012674
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6010
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F010227	Metagenome / Metatranscriptome	306	Y
F010760	Metagenome / Metatranscriptome	299	Y
F090382	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1001267412	F000652	AGGAG	MKKVIVRTQLYQELEVPESWDRYDVYDFLAEHQSFRTAFQGAGNEVARIVDLGVTEETVTEMGEEAFDE*
Ga0114968_1001267415	F010760	AGGA	MIDITKIVKTYNGKIGCMCGCLGKYSYTADGAENHGPGYDVQDSVNERSVRIMAKKILANPNVQREGDIAYVEDRLANRMQAIYFKEQA*
Ga0114968_1001267416	F010227	AGGAG	MQATTFNVSDKLTFVSKEVEDDTTNTEYKCNVEVQLAGDSIWDCELETVTVKSIHISETDYGDGSGDTSIHIAVCYEVDGVDGAEVEGSWRMYTDSGFSDAISALLGTDVSFTEQGMQDDGYASMEL*
Ga0114968_100126744	F090382	GGA	MIRIDPTLNELEVMIVAERLEKNKITSYTLARGNDCIWAYYGQINEYYIFKDGYLVDIQID*