Scaffold Ga0114968_10012545

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10012545
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6044
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F009066	Metagenome	323	Y
F031026	Metagenome	183	N
F042872	Metagenome	157	Y
F072095	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1001254512	F009066	N/A	VEFTVTPEHEKHLAGIVRDLSRDLEAKYRKGQEEHGGALWRRPVWKDAWEEVLDLCTYVHTLKMQLSVIAEIALIGASDESVVAAQSRESCRQILAVLEGFPSAADKK*
Ga0114968_1001254514	F031026	GAG	MPGGLNALLLVLSLALCSCATTSQTQEGPPPSPDTISYFIYEWDKAERTNKPCPQAYRDLFAQSLKALSDSLAETERERARNQ*
Ga0114968_1001254517	F006891	N/A	MSTDQIAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMEREAHTIKTKLWIVALVSGAVFSTIWELLKRRLSF*
Ga0114968_100125454	F072095	AGGA	VSVRDLEQEGVLPISAAQSYGSAQLSQTTALIDLQTKHRDLRNRLDRIEEILESLLKKSGAQS*
Ga0114968_100125456	F042872	N/A	MKLPIIINQIESGNCTVGSNPTPSDAYRYNDLCRNGNTAVITEPKKAHYQQLNLNSRGGYDLTPEAFVYHPNPAVCRMWHAQHEASK*