Scaffold Ga0114968_10011819

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10011819
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6240
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (95.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F007263	Metagenome / Metatranscriptome	354	Y
F013527	Metagenome / Metatranscriptome	270	Y
F039631	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1001181911	F007263	AGG	MIKDYLDETEFYFIKDEIKICCDEQQFIHVCKAHGEQQGCYFCEFNPYENCECE*
Ga0114968_1001181914	F001562	GGAG	MKSQLEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILECCDPIAFAIGLVEHQDYLAEMENE*
Ga0114968_1001181915	F013527	GGAG	MNVYEFNAFINVEAESYDEAIDVFQFQLKYGINKDNVYVADIRDLELSE*
Ga0114968_1001181923	F039631	AGGA	MTSLDRNTIKHSQFGHLDLGQRIRLGAEMIANGEPVSFRGASAETYRLVMTLANRIKQEREFPQCPCEECD*