Basic Information | |
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Taxon OID | 3300009155 Open in IMG/M |
Scaffold ID | Ga0114968_10010498 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6653 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (42.86%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011914 | Metagenome / Metatranscriptome | 285 | Y |
F026210 | Metagenome / Metatranscriptome | 198 | Y |
F048101 | Metagenome / Metatranscriptome | 148 | N |
F062446 | Metagenome / Metatranscriptome | 130 | Y |
F071966 | Metagenome | 121 | Y |
F082109 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114968_1001049810 | F026210 | GGAG | MNKANPLDYDAKYPQVAESTNDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEALRFVEDIGTKIG* |
Ga0114968_1001049812 | F071966 | GAGG | MSLLGIDFDIQGYIFKPFYLLLGALYFIVLLSLLATLYIFLFIRNTLEITLNNIEKNRNKYKRMK* |
Ga0114968_1001049815 | F011914 | N/A | MISNNQIKALSEDELTYLYHCCKTEWDSLNMGYEFNWYIMKAFKNNMIHKLLDKYSANLTDENKPLIMQILNKLEENK* |
Ga0114968_100104982 | F082109 | N/A | MWTPIEFFCLTFLFNHSPMANERLSVKEVIQNREAQLLVESVTLRNDF* |
Ga0114968_100104983 | F062446 | N/A | MIFNPIKIIAFILIVLAWILMTFFFVGCANTSYKTIPDGMSEDAQDYPTKYNMMDSPDGRQNPNVQIRIFGATY* |
Ga0114968_100104986 | F048101 | AGAAG | MKKFKNIKEFLKTCSPDEQEYIYDLYNNASVADLIDLLFEHLPADDTIQEIEEYREEMEWDNNEAEKSNKLNRKCDCDFVGCQGC* |
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