Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10010498 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10010498 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6653
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (42.86%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6653

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (42.86%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011914	Metagenome / Metatranscriptome	285	Y
F026210	Metagenome / Metatranscriptome	198	Y
F048101	Metagenome / Metatranscriptome	148	N
F062446	Metagenome / Metatranscriptome	130	Y
F071966	Metagenome	121	Y
F082109	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1001049810	F026210	GGAG	MNKANPLDYDAKYPQVAESTNDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEALRFVEDIGTKIG*
Ga0114968_1001049812	F071966	GAGG	MSLLGIDFDIQGYIFKPFYLLLGALYFIVLLSLLATLYIFLFIRNTLEITLNNIEKNRNKYKRMK*
Ga0114968_1001049815	F011914	N/A	MISNNQIKALSEDELTYLYHCCKTEWDSLNMGYEFNWYIMKAFKNNMIHKLLDKYSANLTDENKPLIMQILNKLEENK*
Ga0114968_100104982	F082109	N/A	MWTPIEFFCLTFLFNHSPMANERLSVKEVIQNREAQLLVESVTLRNDF*
Ga0114968_100104983	F062446	N/A	MIFNPIKIIAFILIVLAWILMTFFFVGCANTSYKTIPDGMSEDAQDYPTKYNMMDSPDGRQNPNVQIRIFGATY*
Ga0114968_100104986	F048101	AGAAG	MKKFKNIKEFLKTCSPDEQEYIYDLYNNASVADLIDLLFEHLPADDTIQEIEEYREEMEWDNNEAEKSNKLNRKCDCDFVGCQGC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10010498

Overview

Ecosystem & Geography

Associated Families

Sequences