Scaffold Ga0114968_10006313

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10006313
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8733
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030426	Metagenome / Metatranscriptome	185	N
F035303	Metagenome	172	N
F039137	Metagenome	164	Y
F045092	Metagenome	153	N
F047057	Metagenome	150	Y
F068579	Metagenome / Metatranscriptome	124	N
F072328	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100063131	F035303	N/A	SNEGGPMSQVILTTIYNKLVAVTTAGTVYNLVGGKIYQLEGPQGSVMPLLVYAISNEDTTTFMTSATQSMHTLDCAFTFYFKPDSSVVTAMAAEAALFLLLHKASMKPSDVSYSTIESICTSRGVPTINVDSIVIDTTYRIFATKQT*
Ga0114968_1000631314	F030426	GGAGG	MRPAITTTPQAAVNEILGSIAWRHLGIADIENLDEDPVDQYSRIKIRESLAEAFLAGTAWRIDNKKGNQ*
Ga0114968_1000631316	F072328	AGGA	MISILLVSALIVIIVYIVGSSDQIDNQCGVDLTYQRNKKGPRK*
Ga0114968_100063134	F068579	N/A	MLSCLSANDYIEIGERRWHALHNRAQEMLEDSRADSAQRVETMKAIYDLRDRTTQLAIQHGATLEGALEVIEHACKKAKVDGSEAVALMQPEVVVSTALALFGIDLDAESSSPK*
Ga0114968_100063137	F039137	AGG	MATVYELFSSRKYVNNEGKPRAEQQFVVVDAATEGDVVALFGSTLPGEYAHYPNDAALPYDMLAFDYSITKDPSAVSTWQVTMRYRAEIGATSGFNNPTSPLLEPNEVGYRTARLSMTAEFRDLWRVYASVTALQAVASGDYSVTDIGGGSIDVAGIPLSTLVYKQEITILITDSFLPNAQAVATQIGTRNASTFLNYPSGSVVFAGCNCETIPEVGRNSIEYRFVYDQSYHQIQYPVRGNNGSPILAASGSRKGSAEKVYFKQPFNNTSNFNNLSQYFGGL*
Ga0114968_100063138	F045092	GGAGG	MADEINISLNVDVVSGNYRASFRPSTIQPDMATITGSDIVQNITTSAFQAIGIGASVSAGGYFWFRNLDTSTSVTFNPSIQIAMGATNGAGTSTPFLNLRPGEFALGRCVTTTMCALSSTATANLQFGIMSA*
Ga0114968_100063139	F047057	GGA	MKLPRFTSGSIGRLDYKALNQAFTSIEKMDGKAQDGGPYEGAVRESFIATITGLMTDSLQGANQDTGQGTQFQTYVYNWSEVDISYGSNGSGSGVGVSDLQGARGIDYADGVTITAPASYYPAIDFAPYRRFAAGDVVLLTRCAVKSGSTYSMMYSITAVSAVTPFLARLTAIVGTAGLGRYAWTGLSRRIDGSLAEKTEATNLYEMNKVSTPGLTTALTVDGVSWNGSANWGHGQVLVGASATLTKTNLPVGVAGTGTVVIMHQSHVIATTDETTKGVAFYFYSVAPVTAECDA*