NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10006169

Scaffold Ga0114968_10006169


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10006169 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8845
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (92.86%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017442Metagenome240Y
F017592Metagenome239Y
F032530Metagenome179Y
F034044Metagenome175Y
F044356Metagenome154Y
F051785Metagenome143N
F085065Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1000616915F044356AGGAGMIEYFHPAFPKLYRIGGEYAPGLARLFGAHECHEGKAHDIVDGKCTKCGVHVKENK*
Ga0114968_1000616919F051785AGGAGMTQPIDYLEFYKTYIPPPPISTLEDAYVKHHRKYGDRFNAFYTQIPLWMKELFWYDFWKEKKI*
Ga0114968_1000616922F017442AGGAVLSENASASTTTPSKQKKKSINFYDPFTRVDPKLLEQMYRAAQKEKLKQLPEALL*
Ga0114968_100061693F032530AGGAGMSDTPETVLLVSNLLVQQAIESRARKPESVWLPHSFEEAEANANLFAKTQLPMSNPDRNRSLIRAYDRVTKSRETYHV*
Ga0114968_100061694F017592GGAGMYDDGDYGGIDEFMYYVTIAVLFLMTTVFLGAVVGLMYWAML*
Ga0114968_100061696F085065GAGGMTKQELLALLKLLSAIESAMSVNKAQLPNYLFEQIDAAVAVLEREILK*
Ga0114968_100061698F034044AGGAGMTQDDIIKMADASGISYYGMGKDSDRFLHHVETFADLVASAEREACARLCEAQGEYGDEQYAAAIRARSQA*
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