Scaffold Ga0114968_10005119

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10005119
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9737
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F056554	Metagenome / Metatranscriptome	137	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100051192	F098561	AGGA	MAITLGKDCSIMLDGGYIASARNVTLTESARTIDVNAYGSRYSAAYSTGYECTVSVELNDPAEIFSAFSRMHTGTPFTVYGGAAGFSFLAVLTGISETDPIDGVVTCTLEAKMTDPRLTRG*
Ga0114968_100051193	F056554	AGGA	MAITLGKDGSAPPVGEGIISATFTEECETVDISNRSNIGGSTGAPGRKVSKAGFVTKTWEIECHDPDGLLTSLNAAGTSGSYSVMSVTENIGIDGAVTYNVTLKEF*
Ga0114968_100051194	F034165	GAGG	MALGTVEITLGKDVTITGVSNARSCTVTNSASDVDVTKFGDTSRKFRKALIEQTIELECVDAPGVTIGGTFTISGTQTGNATYICTNIGKSSPLDGIETFTVSGSRTVSA*
Ga0114968_100051196	F090310	GAG	MSNRLRTIADSLATGLQSVSWAISSTVVQRKNWANIDAENMSVPYVIVVPAGADITRASRMNMQADYTVTVFVGRQVRTDGDVDAMLDLTDAVMLQVRAHAFAGVTWPTGVTSPQTVTVDINPDDALTERNIWRAVITATYRVFEPNYL*