Scaffold Ga0114968_10005063

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10005063
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9790
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F027829	Metagenome	193	N
F035741	Metagenome / Metatranscriptome	171	N
F041161	Metagenome / Metatranscriptome	160	N
F067260	Metagenome	126	N
F079522	Metagenome	115	N
F083616	Metagenome	112	N
F083794	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000506310	F027829	N/A	MAFTNRFEADISPKKTRIDPKAMQQTIDIPIGSNPDTGKTYSFRVYLAVSKMQKKLNYAPTILITITFFKYKLHLQSRDVKAIVSAFKKLSNFIDTASPNLENKLSQELLTYDQWEKEYFERKNMGIIDINREEYKK*
Ga0114968_1000506311	F079522	GGAG	MNQNVTYGKDRQAIVPYDVAIWWHQAFDVEKSIFNPTYIPADLVEDIHQLQRRSIIKALPDSDPGRKWLILRFFPEGI*
Ga0114968_1000506318	F035741	N/A	MNANDVIGKYLISEQNVPLFAFPGGSQIGMVNKGLVVGPVYSWIEKNNKLYWQFDYTIPGNAPGSYYAEHRPEFWKLSTTGSGGGAINLPTTSSLIPKWALPIAVGALALFLFK*
Ga0114968_100050632	F000710	N/A	MASSMDISYRQGIRSKGFAITTPTGTTQQTLSLSGLAKSFEGLLITSAFTATPSVVINPKQLRVTLTINNDVVIDDDSALHYASPATGGFSGGFPFFIPIPRRLTGQDTIQIRFTNPAASQNVDVTIWYRNEL*
Ga0114968_1000506321	F067260	N/A	MTHFDKIVDPDLKRCETPEQMLQVLMYHYDLDCKLGTITSLAFRQGLKTAVNMIAAKAKSQTSALQN*
Ga0114968_1000506322	F083794	N/A	MTATQATKQLLDMGCVFLSIVDIEGNTIVPKQQNKFTTTADIKKQADKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEPVPAIAVNNSAPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIEEAQPQQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGHSDYDSL*
Ga0114968_100050633	F002287	N/A	MSQISKLGYVDNKLGAPSSGQQTTRILFNTIEAPGTTSGLIFFKTFQGLTQGQTNLTQNKLDSMESMVIKTIWLAQFDTAGILNSFGDLRQQTLSIIVGNQTVVKNLPIQFNQALNAQTFDRLHENAAVQTDGYNTPSKFLQVRMPVEIRLLTDIVIPPQVSFEVRVDSNAGVYGTGAVVCALSGYGKIFSAGNTF*
Ga0114968_100050634	F004838	N/A	MALSAQDKILYVANKLGLSTLNQMQGSTGAVYDVDTELSGQIFTSASRHQNPSVTNITQNEFEVNEALLVEAISFYIGSGGSAQNIQSFYGSNAVIVYDLIIGNKRVMKDTPVFAAGSPYTFATAGKQLVDSGGDFPVTLCYIPRHQTFMEGAGVLIPPQVQWYVDYRIFDVVTGAIIAPEATKQIGCYLFGTRVLLNFNTSI*
Ga0114968_100050638	F083616	N/A	MFLQLHDGPDLPYGLRPFPYPKRSGPMVPVRYAEDPFAPGSPVMQTTPYRLLSGCDQAQVYADFVPQNANGWKVRLDQVSQGQKLVKDYQTLREAKGTGSAPIYGADGTITGFKQASKAEVVAAYIQIGLKALQLAQAGVRAGEASRLRDDAQKLYNENKWGIADVCNQTLVELQNNAQNCYDSLNYWIKDQGTPGKNAGQKRIANRSVVIRQNALLILVKEIEAKGGSFTPGGKGAPVGIAAILALVAGAAFLRF*
Ga0114968_100050639	F041161	N/A	MSRQIADSIEFANDFLPAHTTCQEIWYILKDNLIYRNDPPGIELLQSFPSLMEDNYWGIPGAGDCDCFTIAALACAKARNIPARAVIVGNSSQSPTHIYAQLFDGSKFVDFDLVSSSYGTTKAYKNKQIIKLH*