Scaffold Ga0114968_10004411

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10004411
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10513
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027776	Metagenome	193	Y
F039985	Metagenome / Metatranscriptome	162	N
F044360	Metagenome	154	Y
F051705	Metagenome	143	N
F052463	Metagenome	142	N
F056414	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000441110	F056414	AGG	MHFATAVCDAVINCDMMRPSSTNGANMKLTNYQRSQLKAAACFGCGQIDKVAASLQRENPEAFLRESELDQRDFYHQPMAVHRSYVERFLPRHKSEYSQEQRQIMEQNHYLTTTYQIGVGA*
Ga0114968_1000441111	F027776	GGTGG	MKNPLEIEIKKTVFAHLPAVGDFGVIDRADLATILHSACTEVALAGWARGADSVQKRMDHELEILRKELKAAQIELDYAKAN*
Ga0114968_1000441114	F051705	GAGG	MQITAIFQNDDEAIKAIHSERAWQTLHDINHVLRENRKHGLPFEQAVSEIQASVNAALALIPDY*
Ga0114968_100044112	F052463	GGAGG	MPGNPKVRADMALLEDLDAELVLSMFEEGRSKADICRGLGIGRRALDKWIDENDYHSIITRARVEAASHLACETLEIADGMDVDNAQRDVQRIRTRQWLAERWDRKTYGTDKAQAVNISIQGLRMEALRHVEVVEQLSTDATPNLSTE*
Ga0114968_100044113	F044360	AGGAG	MASKKLLETDVYPSDRFKVFEYSLMVEMETAKMEHEKVWGIDRVIDLVDAEFRRKVSAQRERIWEASQARDEERLEKAIKGMIAAYKALTRWATEAGIDQMPKIDCMEYKMGDGSLMVIVRDKQMATWYDQFHKLPVNRSVWTLEELEVVMNSKTLTQVREIKAAIPGTRMIPIQPQGSSGFEDMENDIDISKPFKGGKMFDTKAAERDKNERRK*
Ga0114968_100044115	F039985	AGGA	MLNLSNNNGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLESVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNECDKAAGNNGGKLPVIEYVNSTAEKVGKGNTRVPNFKLAGWVARPAGMSADGEDFVEPEPAPVRKAAKPAPAPVMDDEEFF*