Scaffold Ga0114968_10004329

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10004329
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10599
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (10.34%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004696	Metagenome	427	Y
F009960	Metagenome	310	Y
F011762	Metagenome / Metatranscriptome	287	N
F013759	Metagenome / Metatranscriptome	268	Y
F014137	Metagenome / Metatranscriptome	265	Y
F017485	Metagenome	240	Y
F022884	Metagenome / Metatranscriptome	212	Y
F073457	Metagenome / Metatranscriptome	120	Y
F084236	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000432910	F017485	N/A	MLTIETKDIVEGITFILMVVGIIGLICVLYEVNELKGLSKGASNFRSIEYRK*
Ga0114968_1000432912	F073457	N/A	MSKFNLEFKESVKTGSNRLSSIIDNPYKNFAASKMSNGRKTMCIVEYTDFMGKKHRIVCNNRKQMSEAQAFLSIFKQETATLKSIVSQYPIKLGRIEKKFLKELRSELNPLGFSNKLINEIAGW*
Ga0114968_1000432917	F011762	N/A	MSKVKVKEIKLGKRGFKAVVKNKKLNFGDGKHIYEVIELSGPKMDKPRMFVDEESVRKYVSEMESGNKMIKLETSLIKNLVSKREKKDAVASKELSEMIPALEEIVPAMMRDNMATRPEDTDK*
Ga0114968_100043292	F022884	N/A	MRYPINNTFHVRCMICGHMVYHISLTDVNNGQHRDLKLNRVKGRRGKYTISHGNYSLYLKFSDIQNIDTFCAQIKRLIC*
Ga0114968_1000432922	F004696	N/A	MDYAISKLKHDEVVLMKKIKGLQDGKPKWAASKQLDELRTALRLLERYNEMVATDEAEQDEYLKEVFEMNPPKAKA*
Ga0114968_100043293	F009960	N/A	MLILKNIEKINGYSLNVKGKGWYFKGWDNTTSEVTHFSIREVAPPHLLRKNITLHKKGRLSTDYIQNMSCYIYGIEIDGLLFYYTKERLNTPEKFRDAIERILNAI*
Ga0114968_100043294	F084236	N/A	MLTIKNQYKLVAETIVVSKNGANQHWIVDDVAEMPGVYDIVVLRKLGIFDTIFRIIRINKEKNELGMYSVQIIQEGLVIDKDQIRLSNIKTADGMLNELKTIMELI*
Ga0114968_100043295	F014137	GGA	MLTIKNIQTIIGETYNEVFNVIVVKEEKSYYEFTLGYATVGKPNYETILLHRQQTDNGMYVMEYNSKTIWLNKDEFDTIDKIIICMQTI*
Ga0114968_100043298	F013759	N/A	MKVELGISIFSKRETMLGLHLTTHNGVNVKDSQLHSERVVEFSIGIVFAILTIGFVTIGDKIDTPSNVMKAIEAFENELDK*