Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10003806 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10003806 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11291
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (18.18%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11291

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (18.18%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009960	Metagenome	310	Y
F010683	Metagenome	300	Y
F018001	Metagenome	237	Y
F023789	Metagenome / Metatranscriptome	208	Y
F039484	Metagenome	163	N
F084228	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100038061	F009960	N/A	KGKGYYFKGWDNTTNDVAYFTLAAVSLSNPLIRITLHKTGLMVFDDIQKKDCYVYGVAVDGLLFHYTKEKLNTPSEFRNTIEQILNGI*
Ga0114968_1000380610	F023789	N/A	MDTTNTHRLTPVERIELQSKIQRLQWLLKECIGIEEYELCSQIRNIIQTKTAILNENQSTNG*
Ga0114968_1000380617	F010683	N/A	MNKRVTKKSVKPAKKVASKKATAMNIIKHKRVVLESVGTESLPDMVFVSAAPAWAKAIVGKRYVSLDRAKAIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI*
Ga0114968_100038062	F039484	GGA	MIIQNPDKLLKQWIPTTDGNLWFVDDVSVTMDSHGTAYIFRCIVELPVTISPNQQYYHQSRRVHKEVKLRLTETDYGKNNVYSVSTDEKVWRGYCKDIDTMNKFISVLADLLPNTDNL*
Ga0114968_1000380631	F018001	N/A	MLTIQNIEYLKGKELNDWKVLDAGEDLRSRMGKNVYLLTFARIDKIGVMQDDRAGVIIDRNINPLLKGYHIKIVYEDWTYEIDTIVWPAENIRNKDVFFGRVLYKINEEYWKRNK*
Ga0114968_1000380632	F084228	N/A	MRNIGNETNKTYNMLTIENITKLENRKLIGGWVVRDMNCHPTRKKYIFDIHCMSPIGVCMDRCTISLNRIGELQRNMFKPDTTAYFFNYNGERTDVCVTGEWIKNPENFISQLKYIINEYHNKQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10003806

Overview

Ecosystem & Geography

Associated Families

Sequences