Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10003393 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10003393 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11970
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (84.21%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11970

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (84.21%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F004955	Metagenome	417	Y
F037735	Metagenome	167	N
F063702	Metagenome	129	Y
F090083	Metagenome	108	Y
F105190	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000339313	F004955	AGG	VVLDLGMTFNPSKALIALVGLICTTVLIAVGSIDQDQGLPIITMIVGYSVGNGMAALTNKSVEPIIKKKER*
Ga0114968_1000339317	F001332	AGGA	MTTHDMIAAIAKAEIAMKSAQWQIERQAEDVAALRKALVELAYVAEENGVYLSNLTKTTQDVIVAIRLGGFK*
Ga0114968_1000339318	F105190	GGGGG	MKCELCKAELTAFDIRLQDLLQGICLNCGKAGDWLHMTPEESRRCAELHAWANMTTDQQAAYDRNRGN*
Ga0114968_100033934	F037735	GGTGG	MAAPTTEIIYDDTITYEEEGVIYDQGGYTDLFNEALDDLANTLTTITGLRVVYDPNKINPPCVFIDAPSFDAFNYNIVTMTFSIKVITLGAADLNGLRNVLNMSASLLSKNVAVKSGRPGYLPIGGQTFAAYDLSIEMQAQTAG*
Ga0114968_100033935	F063702	AGCAGG	MKYTIISDKIGVVGEKFVPGEGINIEALLAHGFIVSDEIVNDTTAPKSAKTKALPKKD*
Ga0114968_100033938	F090083	AGCAG	MEGLTTGIEVLGLKEAVKYLAQVEPGFKKAYVANMKMVAQPMTDAMKASYDDSRFPSGTKRKWSPEGRQVFPLTAAAAVKGVSLRVNNKKTGAAFSVMQKNPAASIFDIAGRANANLLATAFSTKFGRSASRVIWPVFETKISDISANVKKVADDVMAEVNKNFKVV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10003393

Overview

Ecosystem & Geography

Associated Families

Sequences