Scaffold Ga0114968_10002474

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10002474
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14095
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (44.44%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F009398	Metagenome / Metatranscriptome	318	N
F018171	Metagenome / Metatranscriptome	236	Y
F037116	Metagenome / Metatranscriptome	168	N
F078377	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000247410	F006107	GGA	MNAVALRAELAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAMLTTVQVLDNRILPLFDDTGASALDAAANDASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATL*
Ga0114968_1000247411	F018171	N/A	MANTQGRKYIFGSPATLNLYNAAGTEIMAAVISPDLESYDISHEADTEEVRDSSGEVVGHIGYNNRLTLTVNFIPSGTSTANALLSASLPNVNGTAIITGAPVIVMGGFTNAINADTSNRWIYAGGGSIKTTQSGKSTGTITLKKYPSIAASGAATNL*
Ga0114968_1000247419	F078377	N/A	LSEIRLKADFRPLFDPCKHWVFSQIYRKTVFSVDGRLGIAHLDHVEGNKNSKPKQNMSNIITVQLPTETSYWGSTATEADVYRIIGNLETMIRSQFPDVDIDFQHIQEPRGRGIFGDDESLMDSIYQFIQDNWTAAL*
Ga0114968_100024743	F002843	N/A	MIVPVDIISVQCNQNNSLFVTTGTDYDNSGTIVGSEITSQYTLNPGDDLTGQPVEVVNIANALWTPAVVAAYKAANPVVEAAQPTE*
Ga0114968_100024744	F037116	N/A	MEPTNSSTSPGLSLAAAAGATAVSFIPILTDWVRLITAVIGLLCACYGAYRLFKSK*
Ga0114968_100024748	F009398	N/A	MTTIGSSLQQGMAVLQQMLGAPMFIWEGTSIRCIPAAVNDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFILQENSDRIALTFCKPKPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK*
Ga0114968_100024749	F005024	GGAG	MTVDSGKFDLAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGTSRILKRLHLIVQARAAKDPTKNFSGGLYGKTMKKAASSFMRKAIGSVGYLRSAVVKSIRIYNRGFSQYSAPKWVPLVKPPGYRAKKKPNAALVAMANQYGLQEENVAIHKGTVAHGFQAIPGFNPTAFVSMRTGVADNQYNRVAQIYNEAMQKAMDDETTEMVNHMTEALLANGKVLEDNGISIK*