Scaffold Ga0114968_10002155

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10002155
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15182
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (70.97%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006016	Metagenome	383	Y
F039525	Metagenome	163	Y
F042295	Metagenome	158	Y
F043830	Metagenome	155	N
F054803	Metagenome	139	Y
F063386	Metagenome	129	N
F073237	Metagenome	120	Y
F082375	Metagenome	113	N
F085338	Metagenome	111	Y
F090290	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000215514	F054803	GGAG	MATHKEYEEWKADPLAQQEYNKYLLEEAYKTSPKLDEFIEHFTNQFDQIFKEKT*
Ga0114968_1000215515	F073237	GAGG	MNLQDELWFDTSKGRIGILMVLDWHTEQLHYIMGIASGMNENVDINHIYSGGARLPDYVGAPLFFGDWE*
Ga0114968_1000215518	F090290	AGGAG	MDKPLPYTTKSGLQIGCNYTPTQRNYMSADAELLQMALLGIEPEFSQRRVASFVAYAVFLIVVFTTLFALDIK*
Ga0114968_1000215521	F042295	GGA	MALNNFTKFNKTEAVDDSPNTLECYANGCPMAGGISTGGRWVCAYHHQAPSEEWPRVTEALRDAEAIRLAITEVMKIDMISWGANTGGYPPKWQEFAALFDNYPELQPNEHEKIRKTKYEYRLRNELAIRAGLAKRKA*
Ga0114968_1000215522	F085338	GAGG	MTKSDAQKILDEIREGHGNAYTEACAIECLYLTGDLRTHETVRSSGVDEQVRDEGYRARLRQRAIMVARSKE*
Ga0114968_1000215526	F006016	N/A	MTTATLIQTEALISTITSDIDALYVLDQQAKALAEQVKAMKEAIANKYGEGEHKGELHSVSVKLIEVSGTVDYKKLCVSYGITDDVLATFRKEGRADIRVSPAK*
Ga0114968_1000215530	F039525	GAGG	MSETNMSPYIKGFNAGVDCVLTEIRRLEKIAPINLQQLLKHLDPQLDQKTAQTPDKGAS*
Ga0114968_100021557	F063386	N/A	MKIDTKGELEADWEAIERFTKCFDKGCKSEQAYKAKLFSLVLEHGYDVAMDDVEQDRKQVLFMLCTPAGNA*
Ga0114968_100021558	F082375	N/A	MTPKDFVTELFGEGWKPSQLPSFLDAIKGWSEDSQRYYAVRDFAKKLEWAIDPRDRTECHEFDDLVDSKRFEHDLDEN*
Ga0114968_100021559	F043830	N/A	MNPYLNPDDIKQAFFKIQLEDNYNFLEEDLQKLADAFIMAAMPAIVKTERDMCIKFVNTLNTNVARALGEYRENL*