Scaffold Ga0114968_10001447

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10001447
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18183
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003304	Metagenome	494	N
F011753	Metagenome / Metatranscriptome	287	Y
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y
F037193	Metagenome / Metatranscriptome	168	Y
F058800	Metagenome	134	Y
F073257	Metagenome / Metatranscriptome	120	N
F102823	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100014471	F011753	N/A	KGLVGGGYAGRCDAYVKLRGIGDAIIDLKNRKVNPKYDPFYDTDCAQLWAYRAASENPKCACVSVVLASNDATKLTTKVWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMKL*
Ga0114968_1000144714	F037193	AGGA	MKSKDEIAMQVKKEWDNQNLRWKLWVEAGGFRTEIFCYSSAEEEYSKCVKELVDQAYKMQSI*
Ga0114968_1000144716	F102823	AGG	MSALYDWIIVGAGLAIGKLLVAIAVITAITAILAVLFIIEEKTK*
Ga0114968_1000144719	F073257	AGG	MSNTESTKHKFYYGEETYTICVTKDDWWLEESVDMSELMMKCGEEFALDHGMMPPEGLCVECWKGKYLDVVEDYYIGGTTIKDLDLRRCYKCKHTVLPWQSADRVDEVLEALKKPAELCPTCRKSNTIEFTGDLKMDSVCKLNGEPFTAPNITRTQCPVCKDEFFTMSELKKIDAAIREEQSRLGIQP*
Ga0114968_100014474	F058800	N/A	MKQTLSKLFYFLGDTISRTLLRTGIGYGLYKTFMLWSIELDEKFDVWKEVKPRRRKKK*
Ga0114968_100014475	F003304	GGAGG	MKQALVTQSFGDDWKNIIDLTRPRMEAYCKRHNTDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGIIEPKFYVNTGVFVVHSKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRHKDAMIIHYAGQSNDLVKLANQIQADDAKLVELGR*
Ga0114968_100014477	F022371	AGGA	MFCLVEIADIAWVIASFVLYSSLLLSALYCALFIIFKLIDYIKKELDL*
Ga0114968_100014478	F020665	AGGA	MRKRKAGKHIKLLKVEEYDAVKITVNVDDDLYEAMAEAGRQHIVKDKMACFEYALNQSLLELSKEIK*