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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009155 Open in IMG/M |
| Scaffold ID | Ga0114968_10001285 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19207 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (68.75%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004793 | Metagenome / Metatranscriptome | 423 | Y |
| F014841 | Metagenome / Metatranscriptome | 259 | Y |
| F043922 | Metagenome | 155 | Y |
| F054812 | Metagenome / Metatranscriptome | 139 | Y |
| F058789 | Metagenome / Metatranscriptome | 134 | N |
| F072277 | Metagenome | 121 | Y |
| F105048 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114968_100012851 | F054812 | AGG | MNEQEVNERFDNLVKPQVVKEKKEPAKFPELRYLWGVVLLGSFVLVVLSAVITTVIEAL* |
| Ga0114968_1000128513 | F072277 | N/A | VESERRTDMKCVKCGVAVGKMEVFQGGVCLQCYAVEFEKEFQSALKIARLK* |
| Ga0114968_1000128519 | F105048 | N/A | MILLSWLRGNKPLRVSEGSLRAIRRAQLDKTLAEEADKQRARKMARFSLISKPQ* |
| Ga0114968_1000128522 | F014841 | N/A | MGSEEQKKPSAIDNALAEIGRVAFMEPAICTGWVLVSEWMGDGIKDYWTLTLADDQNPDWRHLGLVHHGLKYWEGNDDIGLRDK* |
| Ga0114968_1000128524 | F058789 | N/A | MGSFASKAPCRDADPWLFDQFNLDLVQPALNYCSRCIFWEECDSLVKPKPSFYDGVVAGKVWRNGRIVAKLDASSPYRLIVGEENIEENYDALEIRGSELLGNRDELFLSREESDNRGEQKSKEDL* |
| Ga0114968_1000128532 | F043922 | N/A | MNRREKQKAIQEAYSKWSEKVEFTSETGASNEDESKIMEEISTILQGNKPQ* |
| Ga0114968_100012856 | F004793 | AGGAGG | MTIEEAKKIVGNQPTWALKNMVKALQMLPWRNTAEDLERLTAAKIVLKHRK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |