Scaffold Ga0114968_10000790

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000790
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23869
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.90%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004839	Metagenome / Metatranscriptome	421	N
F010541	Metagenome / Metatranscriptome	302	Y
F018511	Metagenome / Metatranscriptome	234	N
F051740	Metagenome / Metatranscriptome	143	N
F060725	Metagenome	132	N
F090088	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000079015	F051740	N/A	MIVREKSKLMIYVGNDPTGKAGILKKAIGNFTQAELRGWYNANPTSVSQHVIFTPEKKTYEPNKEDDSSSSEQG*
Ga0114968_1000079021	F018511	N/A	MKGNSIWGELAIRIPQEYKEQVMATVDRTYRVLSIDPSDMDYLFQIYNNFVNNYEPERRNCPACRTKVVGKMRQIVQFWRDEQ*
Ga0114968_1000079023	F090088	AGG	MEDKEALGKKVFLEFYSTFILDDEIEETGRVFYLAQKASIIHLNLVRGVLQNDEYIINMAYLKDVINKIKI*
Ga0114968_1000079024	F060725	N/A	MIKLFIGGQEVDLNQNEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEVDGVPILTGKARLEGADLQAINSGFVAANFKVSLIGNNADWFADVGNILVRDLGWSTIEVSETTVKANYNPVTAEYCFILMKWKAWENETYILYNELTPAIFIWQILEKAFKDKGYQLNSIFKTDPFNRLIIPMGLNLDADYIKDFVNLRASNPSPSTFTKSAGENGTVDITFTDETTSPNFDTGGNYTGGTYTVPINALYELIAELNVTLTATIGDINQFAELILFFEVNGNNVSTYDLTNETSLNDSISLEFLGDLVANDTVKLRLRYENVSFNLSIAGSLSIVAEKEGLETGEIVNLQYIIPISWYARDIIADLTTIFNLAWETDVLNRQVYAYPKDDYTIRYRANSTGAASITSFDGFFKASNKYDLNVRDVDGSDFQVLDGYKSSQVLAYATDDDTTNKEEERRGVNIYSGGYNFPTDRFENGIEFIYTNFFAKAIHINDVTITTGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRAGLDGKIRLFDETTSAASAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYTTFAKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNTNDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNVLVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIISGSTIGINVDTHYDGANYEVVVNGVTKG*
Ga0114968_100007903	F010541	N/A	MEKTIYSVMYFGNAKRYQDLCEEVAAYSKRHAVEKVYAKMRNEDYFPDDFFLWGGLVKDCDGNVIADANDETIEYDGGYFYAEPVMQ*
Ga0114968_100007906	F004839	N/A	MEKNFTNTQFKWTFESISDNIPTIMLLTIILTYGVNAFLTAIFLPIDFWIAIIASTILQLGRFAVVFMDFLNPTKGRSPYPPKIALGATVIALIEVFFGLMEKYSGSEFITMFFFVGTIVCFGYLLEINFVNKGVEAYGLEEPKVIKRRKRRVVAKKVTEDSPKESKGYVTSFKTITL*