Scaffold Ga0114968_10000765

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000765
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24173
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F020649	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000076511	F010817	N/A	LKKFVSVLALNLFLVGCATVTPDKIQDDKSSYDATTPKQYDKDNGGLISFIGDDALITYQARERYNNLISMYRIKFKKEKAIDLKEDSGIKVYKDNFNNNLYLIDSEHLVYFGVLNSWLKEKVPQDNIIDKVLDKTN*
Ga0114968_1000076513	F014229	GGAG	MNKLQLAAVALLSIFLGACATTPTGQVDPATSVSNALPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAGIVEGLTTGTAPTPAELQKALTDYLPEEKTHWVNYVSVIKDIYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE*
Ga0114968_1000076514	F009669	N/A	MKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPTLVAFLPDAAEVYITGIAKLIAVVSGIVFALTVKDAAVTGGTVAQTNEAKGRTNGENI*
Ga0114968_1000076527	F020649	N/A	MLIKIKNWWTNLKTYDKFFFISFVPAMLFTFWGLSDLYFNYFDLLSREDHLQFFLRVFFPVSIATLVTVLERNNRKKLIKDIKDYLDE*