Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10000760 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10000760 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24236
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (79.49%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

24236

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (79.49%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F056554	Metagenome / Metatranscriptome	137	Y
F072014	Metagenome	121	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000076016	F102439	N/A	MGEVQRSLLADDELPPPKGKRRRMPERLSPPMRKFLTKLARIGARVTWCIELLYDPSKGGQGELSDRAKAGDHTLVLDTVREVEYRAAALAEDIEAFMMPPDKLPSEPGKPARVEAMARRQAAKLHIFD*
Ga0114968_100007602	F072014	GGCGG	MSFIHLPPPSDVVQALMDRAWDDDISDDDRILLETAAKTLEVTLERCIRLASVIEKTEVGL*
Ga0114968_1000076033	F098561	GAG	MAITLGKDCTIRLDGGTITSARNVTLTESARTIDVNPYGSRYAATYSTGYECTVSVELNDAGDLGTAFQKMHKGGTFEVSGGAAGFSFLAVLTGISETDPIDGVATFVLEGKMTDPRLVRE*
Ga0114968_1000076034	F056554	AGGA	MAISLGKDGAAPPFGAGIISATYTEECETIDISNRSNVGGSAGGPGRKMSKAGFVTKTWEIECHDATNLIANLEAAGSNFSVMSVSESISVEGAVTFNVTAKEFT*
Ga0114968_1000076035	F034165	GAGG	MPTTSSVTITLGKDVSIGGVSNARSCTVTNSASDVDVTKFGDTSRKFRKALIEQTIELECVDDPGVTIGSTFTASGTATGNATYIVTNIAKSFPLDGILTYTVSGSRTIAAS*
Ga0114968_1000076037	F090310	GGAG	MSSVLRSIADSLATGLQSVTWNITSTVVERKNWANIDVDAMSVPRVFVVPGNADVTRISRQMMQVDYTVTVFVGRHVTTDSEVDAMLDLADSVMLQVRAHSFSTVTWPAGVTSPQTVGIDLNPDDALTERNVWRAVITATYRVFESNVLPTV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10000760

Overview

Ecosystem & Geography

Associated Families

Sequences