NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10000760

Scaffold Ga0114968_10000760


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10000760 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24236
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (79.49%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034165Metagenome / Metatranscriptome175Y
F056554Metagenome / Metatranscriptome137Y
F072014Metagenome121Y
F090310Metagenome108Y
F098561Metagenome103Y
F102439Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1000076016F102439N/AMGEVQRSLLADDELPPPKGKRRRMPERLSPPMRKFLTKLARIGARVTWCIELLYDPSKGGQGELSDRAKAGDHTLVLDTVREVEYRAAALAEDIEAFMMPPDKLPSEPGKPARVEAMARRQAAKLHIFD*
Ga0114968_100007602F072014GGCGGMSFIHLPPPSDVVQALMDRAWDDDISDDDRILLETAAKTLEVTLERCIRLASVIEKTEVGL*
Ga0114968_1000076033F098561GAGMAITLGKDCTIRLDGGTITSARNVTLTESARTIDVNPYGSRYAATYSTGYECTVSVELNDAGDLGTAFQKMHKGGTFEVSGGAAGFSFLAVLTGISETDPIDGVATFVLEGKMTDPRLVRE*
Ga0114968_1000076034F056554AGGAMAISLGKDGAAPPFGAGIISATYTEECETIDISNRSNVGGSAGGPGRKMSKAGFVTKTWEIECHDATNLIANLEAAGSNFSVMSVSESISVEGAVTFNVTAKEFT*
Ga0114968_1000076035F034165GAGGMPTTSSVTITLGKDVSIGGVSNARSCTVTNSASDVDVTKFGDTSRKFRKALIEQTIELECVDDPGVTIGSTFTASGTATGNATYIVTNIAKSFPLDGILTYTVSGSRTIAAS*
Ga0114968_1000076037F090310GGAGMSSVLRSIADSLATGLQSVTWNITSTVVERKNWANIDVDAMSVPRVFVVPGNADVTRISRQMMQVDYTVTVFVGRHVTTDSEVDAMLDLADSVMLQVRAHSFSTVTWPAGVTSPQTVGIDLNPDDALTERNVWRAVITATYRVFESNVLPTV*

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