Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10000729 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10000729 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24693
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (86.84%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

24693

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (86.84%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004005	Metagenome	457	Y
F018508	Metagenome	234	N
F021491	Metagenome / Metatranscriptome	218	Y
F036595	Metagenome	169	Y
F046244	Metagenome	151	N
F073284	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000072913	F073284	AGGAG	MKKLEAMTEEEKLEALNTLQLYIESAIESEQENPAEFKLETQHRVDLVLVNLREIFGLQDIA*
Ga0114968_1000072920	F021491	N/A	MSVQKKIEEMVLQYILKTEGSARIMSPQDVGKLARDAMHKGAMLGYDAGMKMSLRAHGNELEVAELTVKELTERVKELEMQMIASQQ*
Ga0114968_1000072924	F004005	GGAG	MTNATLFNSNLAMYGVPDIVAYVNSVKASSTYKFTGANMIVAGLMSDAQELIADGEVERAREGARQTLNIAKHILFLIADGELVGTVERK*
Ga0114968_1000072927	F046244	GGAG	MIDEERGAMREHIVWLTKELEDTRTKLKIRDELLSELLDPEQLGHAVTNEVRGRIYTILHLQENN*
Ga0114968_100007293	F036595	GGAG	MIEFLKQLILARVNRPKPSVEEVEVQVWAFVVKSITIMVLGIAFGTLWLIGFEKQETELAPIDAIFLEILKAIAFMGVGTMGGISGRKASNAIAKAIVGEDDATK*
Ga0114968_1000072931	F018508	GGAG	MVKKSLSKVLGGLKQPEFPMNTFEVFMNSRLVELSVVKREHEKRWGINRLIELVDSEFRIKVWRQAERVFEASVSRDEVKLDRAVAGMIKAYAALETWAVENGVSEMPAIVAVEHEMQDGSVMVVVGTHHDATLYQQFRPDVANRHIWTMEELELIMDSPVIKDTMKIKSLMPCAALVRLDKDAKEFPLGGATGFDDVKSDELEASSLPKVFDTSKIGKNRANRALEEI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10000729

Overview

Ecosystem & Geography

Associated Families

Sequences