Scaffold Ga0114968_10000600

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000600
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26541
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (17.78%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009003	Metagenome / Metatranscriptome	324	Y
F011136	Metagenome / Metatranscriptome	294	Y
F026004	Metagenome	199	Y
F027408	Metagenome	194	N
F037731	Metagenome	167	N
F042339	Metagenome	158	Y
F043894	Metagenome	155	N
F053068	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000060010	F011136	AGG	MDRPEQDVQDIVCGGKVEQYVNRALWLSWHSNRSDYAIKYRKYYELHTEKSAEDSKQDETWIGAFVDGEYLYSAIGRMHEFDAILLRLYSKPDFNYKELSSTTGIPYPYLRTAIHRALKKIREHVELQRAIAHSKREASDL*
Ga0114968_1000060013	F043894	N/A	MRQSNELNGLIARTVGSKAALLRAMQRSNTPIVKKTLHNWCVDPGSIKLRQLMNLSNVMQLPLCEIINSITIKNEGDE*
Ga0114968_1000060021	F027408	N/A	MSINMQYDKQREIELLRKLFLLTAKRSMRPAMSDNMAMRLIFEELLLLTDKDEYKL*
Ga0114968_1000060028	F009003	N/A	MKAKDKAWQLYSNYFDIVEGGEQYGQLALVHIKAVNAALHSVNEALTYAPDDIVNDFEGTGEYYSVKAYYMHVKSELLKLNKYEAKGNVKHDQ*
Ga0114968_1000060029	F053068	AGGAG	MTQQKKETAIRRLHMALKKRFQGQAINMPWSEMEGFLNAAQTVEMNHIHDAYHEGYTDCKAGLPNKTQQNDSNINI*
Ga0114968_1000060033	F042339	N/A	MMYWYGTAMEIDSLYQLERLKTTYYAKITGIQAQSYETLAEIYANKQAIEKAIATEKDEEIKQLKKRNRRLIITNTALTLGITAVAVSTIYFAIL*
Ga0114968_1000060034	F026004	N/A	MEENKLRNTVLIAAVASVMLIMIIVGMKTCNENTDPAVDRLRSINDSLYDVIDQNNQKADSLFLKIDSLNIHQDTIIQQQQITNEIYRNETYNILSSTPSNANAQFRATLKKSDSLLKAGFYTRTYNLRSAAFQSQLQ*
Ga0114968_1000060036	F037731	GAG	MEEQKKQTVTKSNALKSLRYKLQLIDGLWSIPLAFLVFAISGTVSVAYFNDAIISTEYIQYIVLAALVMVFANFVVFLGIRFNFRALQREIYNKEVKYEINTYLTTWQKVLLYLCLYAFYFAAYLYILHMLMTVTA*