Scaffold Ga0114968_10000576

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000576
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27142
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (85.71%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003784	Metagenome	468	Y
F007691	Metagenome / Metatranscriptome	346	Y
F016784	Metagenome / Metatranscriptome	244	Y
F020684	Metagenome	222	Y
F023834	Metagenome	208	Y
F082391	Metagenome / Metatranscriptome	113	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000057610	F020684	AGGAG	MVLSNYALTIEEEAVCVEVGYQRQKPYFADPMKNVNYSEGDLWEMWQHVVCAGSELAFARMVGKYDFTPHYNKWKSELDIPGFGEIRYSFPPVRGMRYSSRDNDNLVYVLMSDGLCHKTRRVGPDWKGPEYKAIGWKLGSECKRDEWRYNDRTWYVPVIYLNPMESLIFNGE*
Ga0114968_1000057614	F003784	GAG	MDYSGTDFAAYGLSSPEPRQVQRDTGSKTATNPLVDHAAVTGYRALGVSTEDLTSFIESFASLRAQRVKGVGHKQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCE*
Ga0114968_1000057618	F095162	GGAG	MESEKRLASAAKQAVYYRNYRRARDRALVKLAQAYPDTYKELLEKEKVSDEQEGKAWIDLNGTTIAPRIVARAKARGITFTETSTNQGNNGGEA*
Ga0114968_1000057620	F023834	AGAAGG	MNKEYWQAKAELCRDLALIQIQEEETEKEAGMNLMRMTYALSMVDVYSEGQGENE*
Ga0114968_1000057622	F093528	AGG	MSEERSVTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDTPDKSVSDVVKEIQEEAGE*
Ga0114968_1000057626	F007691	AGGCGG	METINELINEIYEDNYSHLEFDDNMGGDCDCHIHTTLKTIVKYSGEGEGE*
Ga0114968_1000057635	F082391	GGAGG	VDNNNKVPRSVHFADFLVIFAGLLHNILSAIQAFTEELMEVAVYNANRNSEVSKVWEQFSNDLEKIEEDTDGR*
Ga0114968_100005765	F016784	AGGA	MDLNTFDYVEPEFKNVIATGEYAAHYWFEQGWKACRLAFLLHKQAEEAGALRV*