Scaffold Ga0114968_10000551

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000551
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27704
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (86.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F005558	Metagenome	396	Y
F012001	Metagenome / Metatranscriptome	284	Y
F033006	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000055120	F001515	AGG	VANKSSFDLDFGFGRKGEQLVDDLLTGNLTVEVKRDRKWFKTNNLYIETECFFQKAGDWAPSGLGVTEAGYWAFVLQESTLIVPIDVLRYAVKEFGRDISCFIPPNQSKGFLITVDDLMTATRKYKNDAGVE*
Ga0114968_1000055131	F005558	AGGAG	MQQDAISWGELAELTHVTQVERFNFCTCEDNEGNENPYDDCPETEEN*
Ga0114968_1000055149	F033006	GAG	MQWLENGFFDHLDKFANSLGYEHYAIAIPLAMVKWKSPEDRDVFIMTITNQDVKGGGNRDFNPLAVN*
Ga0114968_100005519	F012001	AGGA	MNQEKMKQVALTYLRSAAAVAVGLYMTGVHDPKTLASAFVAGLVGPVLKALDPSAKEFGVTKK*