Scaffold Ga0114968_10000373

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000373
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33323
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (12.73%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032276	Metagenome / Metatranscriptome	180	N
F036694	Metagenome	169	N
F046372	Metagenome / Metatranscriptome	151	N
F052587	Metagenome / Metatranscriptome	142	N
F052596	Metagenome	142	N
F054864	Metagenome / Metatranscriptome	139	N
F076085	Metagenome	118	N
F096881	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000037321	F052587	N/A	MFNKSIILCIITLCVHLLIVWFLYSPYNELGIIKNFRNEIDSINKINDSLYSEIKYHNIEIEHYEQEISYLGHQKQTIIIKYKTKVNEIDTLNNNNLVAEFDSIFSKFNYK*
Ga0114968_1000037325	F052596	N/A	MNYEKFKQIIDLQIAHNKRSDELYALKIDLLETFDEITRVTDLLWAEVLTENGDYHLCYYLYEMNGINGTPDLNEEYKDTKELYDYLIENKGFK*
Ga0114968_100003733	F096881	N/A	MAITILSKPTDALYYGYVPCYNNQWFVASSSQTAAANFKYYIVVTDLLSGYSVTEKFLPNPSGKLQFDASKFSELLMTNYIPVNVYGFQQNTSIRKIRVNIGEIYGSTLPGTIYTGTNIDYIVWNGSLEMLTFSQYNSKNYTWDLSTNPNLNYPVLLSDLADDYTFNNRSNFLYWMVLEGQTDLPKVYLRTYNAAGSVLNTYTITNGYNSTGAYQTNMVCIDVGKKGIDGINASYLVGVEYYDIMAEVSSELAPFKIKRYTIKCSPRFDVYTLHYLSNTGAYETLHCSKVSELNSTKTSTTFKRSPWTVVSNVMTLDYSVAVEQPTIVNVQNGLKLNSDWVTKAELLKYKDLFSSPDVKLDLGTAQGYASVKVTNGSYVSKNNDKLRNLTFDLLFTHNNQRQKG*
Ga0114968_1000037346	F076085	N/A	MKDLLSVSEFATLHSVSHQAIYYKIKTNQIKYIMIGKTKFIEKTSKYKKRAKNNCFDNQIVSNKSKNKH*
Ga0114968_1000037347	F036694	N/A	LSIKTIVDKHFADNYTYYKSVCKRYYNGRYLAEDLLHELYLKLSNSNPEQIERYHKANKLNCLGLLIIKDLFRHRTQKLLHIDGNTSNLFEAANFEILDFKQVDEEYFQIDEILIDKIKNCIFDGLLNQDHDIEVFVMAQIEPLYRMEQRTKINRSSLKKAYENARIKLKNQLK*
Ga0114968_1000037355	F032276	N/A	MIPTNVNNLTIKEFIEYENIRTSSLENIDKIIQIASSFTDISVSEYENMSFNELEKVKSKVLLLINSKPNTRLKNTFWHDGTRYKACKDEKDFKTNQYTALKQYETDVINNLHKILALIYVKCPVFSKYKFNSDNVEQINDVIYNYGKVGDVYGTLFFYSNRSEKLKADLLNSLEEVQKEIAIHMEEVNRELNLSEKNM
Ga0114968_100003737	F054864	N/A	METNVISKIKDFIITKLSVDERVALEGLNPVAEKPTIPTDEKKPSTEQTPEVKMKEAKTVDGLVFAYDGELVIGTAIMDITSGTASPVMDGEYTMEDGNIVTITSGVVAEIASTKEEAPELPEVVAPELKMPDMKTQMSNMQVSLESQISSLKKQVVLLNKVVNEILNTPIQNETKVSKNWEELSPLEKFRLSK*
Ga0114968_100003739	F046372	N/A	MACVLTSGYTFLGCKGGAGGIKKVYLTEFENNSGTGYTFTATAGLVTAYTLATGKKYRVYSLDKEMSNMTSPGTYTPGSGTVSYEPQIDFTIKKLTTAVIQEIHLVAQNVLTMMVEDINGDYWLFGKDQGMDLMTWSLESGTALTDFNGQKLSFKGKEIAPIYKVTSTLIANLIV*