Scaffold Ga0114968_10000329

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000329
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34956
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (55.36%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F024113	Metagenome / Metatranscriptome	207	Y
F083916	Metagenome	112	Y
F092064	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100003291	F083916	N/A	NAPYCKASDYVVIWNNIAEWAGTADSSETRALIIHGYKDAIAREKK*
Ga0114968_1000032927	F092064	N/A	MKKAPKQIIAFLRNPSTWNADAFETAIRNEVENSTGALTASDELLIGSLVLVVETLVKAHIGLLEHGAIYHYNAGDAPSPYYKIRTESMDKAIKILAELALVARGRPKIKNKASEVDELFATA*
Ga0114968_1000032945	F014737	GAG	MTTINAVTGSQINHAEFVKLTVGNAATVYTFCNAAAPITVGGITFANLGALLNVGDVQRDIKATSDDMTIALTGIDPTNVGIILGNDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVSVTEDFNSEARTRIATCSISCSSMRRILENRLSGVKTNQNNWQFIYAGDTSMNRVSEISNTYFDFGSPPMTQTQASETTVTLDSSSTGGD*
Ga0114968_1000032946	F023109	GGTGG	MIRQATRYDIPRLLEIVEAYAYENPIKKLGEPCNHFPRYVEELLFSIIQGRGFIYVDSHLRGAIVAYKSSNIWSPKVKELNELLWWVEPEHRNGTVGGRLWKAFDERAKEMLKAGDVDFVCTSISANGPLIDYTRRGYKALGATFVRE*
Ga0114968_1000032949	F024113	GGA	MAIFNKNTLAQVSGFDNPILAGELVWNQKTYWNLTFTNSANGLPVDLTGATLNAQIVRRELSNIIDTRNGLTFDIADYNPAPAAIPLTITNIVAAAGSCTLVIDASAWSLMSNDPELEINAVDPVGYSGRVKVSFPVSGSTPADDSIIFLLFLVRSDGVIVL*
Ga0114968_1000032956	F000332	GGA	MKWLILLFALVIAGAVAKDGCHVREFYGIGYTIHNPSERHQQMIQWLKNNAPYCKASDYVVIWNNIAEWAGTADSSETRALIIHGYKDAI