Scaffold Ga0114968_10000282

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000282
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37784
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (67.19%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002009	Metagenome / Metatranscriptome	604	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004760	Metagenome / Metatranscriptome	424	N
F007467	Metagenome / Metatranscriptome	350	Y
F007747	Metagenome / Metatranscriptome	345	Y
F010449	Metagenome / Metatranscriptome	303	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N
F014827	Metagenome / Metatranscriptome	259	Y
F104727	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000028211	F004760	AGGA	MPIYQYTDTRNGSVVELEKSVAERDSVPKYLKRFTVPQRLALVGVGDPLDNPLGSNKTNIMKGYYKQEQKLGSRFKSEFSADQVKRAWSRKGD*
Ga0114968_1000028212	F010603	AGGAG	MANEFVRSTRKAKGKAIRFDTQGFTNVFEITASSSGGTVNTVATATASLNVTLNGTSYRIALHT*
Ga0114968_1000028213	F012569	N/A	MSRALDKFQAQYGFSVGTTGTAPAGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGKVIGYIAG*
Ga0114968_1000028215	F010449	GGGGG	MSEEQVWNMEVRLARMEERQVQLYSMVERSLANYADIANKVNALEHLRTRILALSGVIGLICSMAWDVIKNRNN*
Ga0114968_1000028217	F000635	AGAAG	MTITEIAQFAGEKIGKTDADTITFLQKSAALNYRRVWNFAPWRETVTNSTYAITDITSRTVALGTSVETPLSVAWGDNELTPMDLATIISQDADLLDIDRTGTPQAYYFKGRNTSGIAEIDVYPALDTTSTTTLKVIEKLQCLTRSNYVVDFPPTSNAIGDELRLPHVSHVVLALTHADALERERQYGKAQLVVQTANTDLASMANYELSQVGGMKQITPTSLGELGLEEII*
Ga0114968_1000028227	F007467	N/A	MTEKEAWEYFDDGLKGAQSFDEAVEWVKKNQKMVKKLTMQAMIRKFDEDISHANKTWLN*
Ga0114968_100002823	F014827	N/A	VLRAILEIIAAVFRIIPSWKQKRTQNFENEWRDNRKAIDSDLSGESWWLRNNDTNNKHDRDS*
Ga0114968_1000028232	F002009	AGGAGG	MTAPTIQEMGNAAQEIVWRVMGKGSEKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL*
Ga0114968_1000028236	F007747	N/A	MKLGKITFGKSRKAPKMVLVDVTYDDKTGAELFRIGMKLLKKDREAVIEYVIKKSLAYAIKK*
Ga0114968_1000028237	F003304	N/A	MKQALVTQSFGDDWKKILDLTKPRMEEYCKRHSCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKADMVKLASAFGGIIEPQFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWKIPLTELDPSFNCMTSVEGHFGLDRYKDAYIIHYAGQSNDMVKLAGQIKEDDAKLKEAGR*
Ga0114968_1000028243	F002826	GGA	MNMEAKNRLKWARDMLAIAREKLVLERNRATHGRSVDMIQIITMVDAASLVCKEVVGEE*
Ga0114968_1000028256	F104727	N/A	MKNTKEKHYIAEVQEQHGEYEHTTKYLFKTAGDPLEYAEKVSKTWYGFEEPDSADNGGYWQNGEIISSVGEVKKVSLEHYNVLKKYLSVL*
Ga0114968_100002827	F001459	GGGGG	MRRLRAIMAFIRHQEWVDEPKWEAEDERALTGFLGSLTGKKLGLILLNLTLRQNASAVEKEANSLAEACGYAKGFRGCVATIESLCSPKQNSPILDSRDGVDESAVN*