Scaffold Ga0114968_10000255

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000255
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39431
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (90.28%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F005558	Metagenome	396	Y
F021756	Metagenome / Metatranscriptome	217	Y
F027417	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000025549	F027417	AGGAGG	MEYDYRVTFITDYLTITTNVSLNLDDTIGNCSDEANEQARINGLNNIVDELGRFDETLINDITVTLLLKDEEIEL*
Ga0114968_100002555	F001094	GGA	MEQVMDTKKLKAIALTYVRAGIAATLALYLAGETDAKKLLLAAVAAVAGPVLKALDPNSPEFGRGSK*
Ga0114968_1000025552	F005558	GAGG	MDKVMYWSELAELTHATQVERFNWCICEDNDGLENPYSDCPKEGE*
Ga0114968_1000025572	F021756	N/A	EAKEPPAPEKDENYCKFYCKYYDSSGEMGCVGLKKGRTEVSEIIIPDPDVDKNAVLYLQYDAAIKELEKKKDSLKASFEGVLGTTLSGAEISWTTVAGRTTVDSNEVEKLLGFVPKLVGTETQRLSIKLNGGK*