NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10000161

Scaffold Ga0114968_10000161


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10000161 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49514
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (89.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000346Metagenome / Metatranscriptome1253Y
F002420Metagenome / Metatranscriptome560Y
F008303Metagenome / Metatranscriptome335Y
F028085Metagenome192Y
F042869Metagenome157Y
F069826Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1000016112F000346AGGAGVDKKDLKQDKKMIAGAVHKHEKKLHPGKPMTKLAKGGKTNEMMLSMGRGMAKVANQRGK*
Ga0114968_1000016146F069826AGGAMTEEIKKRKGRGPSKKPTLFNTSLRLPRGVMDYFNTHHPYSKQAKIREILTEYVNSQQQGANNGNN*
Ga0114968_1000016149F008303GGGGGMIDRLIISAVLGTVGFNGLFPDTPPPLTLKQKAKERSISNMCDRKSKSKAVKDLCKRWKEKNT*
Ga0114968_1000016150F002420AGGAGMTFREKTIKYIKDILRAKTISEVIQLELTEAHLRKLEAETAAEYAYAAMQYNEERIVRLEKRLAKHAGDKHD*
Ga0114968_1000016151F042869GGAGMIEKYDTIKNYIPIGSIELKLAVARAEGYAIRVEETRYHHVVDGTVVTSVDESKPKYYFFNDRPLPALDPYRIAMEFYLKEKNT*
Ga0114968_1000016153F028085GGAGGMLEAIANILVMATMLALGAILFVFVCAMIGWMIYTTQNGGDDD*
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Institute for Fundamental Biomedical Research
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