Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10000132 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10000132 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	56008
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (20.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

56008

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (20.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017268	Metagenome / Metatranscriptome	241	Y
F038565	Metagenome / Metatranscriptome	165	Y
F039478	Metagenome / Metatranscriptome	163	Y
F043788	Metagenome / Metatranscriptome	155	Y
F050171	Metagenome / Metatranscriptome	145	Y
F071967	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000013216	F038565	N/A	VTNKKKFNFPASLLKQIDECSFGGYILFNFSNKGEPQVYTKFDNQINAMALLYYLNTWGQSIDQLNLEATTDLIARKNEEEDSEEED*
Ga0114968_1000013253	F017268	N/A	VNLDITALFNIILAALSFLGGWLFTRVFSLFDKQENLMKEINDKTFSDFITLRKEMEAEGRKHQQEISDLALKISTTYVTKESFDDYFDRIESKLDRNFDIIQEHLINKK*
Ga0114968_1000013255	F071967	N/A	VSNQSEALAICSEFAEEYGIDSKDNNKIIVYMKSEYINELKNMLENKNYKLKSFQVYGDEAIVYFIPKKRK*
Ga0114968_1000013259	F039478	N/A	MLKKILEFIDGVFEEEKEQPVLGTLYKIKGEVLPFRYIRFTNEVYSNKPVYHFKHHQLKQYKFNDLSKVERKANNEEVRIYNLIKDHVNEVAENND*
Ga0114968_1000013271	F050171	N/A	MGMFNYIKVEQDLPLNDELKALDIDFKKEEFQTKELEESLMSTYIIRDYRLFELKITSHWEDNPDYVKDGSRFGEFFNKNKLVKDSEEEVFRDDYTGTFTFGAYISGKTKESYDYFPDWKCVVVQGLLTEISLIKPIEKNSSCQRIEAQESFMKEIEDHERKMKCPVYSFYFKYYVKTMNLVEWKLSIGIVKIINFLNWLQWKGVRKVIRILTPR*
Ga0114968_100001329	F043788	GAGG	MASLDDIYDIIQKLEDGGIEYLLITVQKGKKQGKADVFFSLKDRASMKILATGLSAFNKEIDNIDKQDEEEDDE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10000132

Overview

Ecosystem & Geography

Associated Families

Sequences