Scaffold Ga0114968_10000112

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000112
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60852
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (87.34%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008879	Metagenome / Metatranscriptome	326	Y
F042869	Metagenome	157	Y
F046255	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000011213	F042869	GGA	MVIAKGWRKRQIMEKQMNKLIGKDDTIKNCMPIGSIELKLAVAKAEGYSIREAKTRYHHIVGGTVVTSVDETKPTYYYYNDNMLLPMFDPYRVAMEFYLREKQIKGEADD*
Ga0114968_1000011233	F046255	GGAG	MNDQKIALSLNLVNAVIQFLGTKPYQETFQLIQAIQEQAIPQMPMPEAAQPAATAE*
Ga0114968_1000011238	F008879	AGGA	MATTFKKGDVVKLAVAVPEGPVIALRMTEDGMVQYLVEWQDADGTAQQRWFDEDQLTGA*