Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10000084 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10000084 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	75177
Total Scaffold Genes	118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (38.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

75177

Total Scaffold Genes

118 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (38.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F010682	Metagenome	300	Y
F039113	Metagenome	164	Y
F045546	Metagenome	152	N
F048284	Metagenome	148	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000008410	F039113	N/A	MDSALREIKQIRDAIISIDTSLQLIALSKSSDKRTTVFVSKKVICQRLNVPTVTLDKLVYQGITSGGKSGLVQGTHYCKTDPAEQNSSKFLYDPHAIIQSAWSNFQNND*
Ga0114968_1000008420	F045546	AGGCGG	VARKKGSDDFLPNGPRPLGSFKPISNIIGSDKKSQLLRPLPFKRRFRPAINTKDFSVVSEYNYASLWSRWRRGYELSMYAQGAYSGLIYSSFKYYVSGTAGVGGYIPGLFFVYPTLRSDMRMHMVGIRPRDTFNFLDFGISIQSVTQYDETTYAVVLSQRFGSPISYFTGEVLSNRFNSDGTEKQFGYSNYTVTAVGLNGVILEPSINPDFNTLFLSFAADKSWSVVNSTTIVVPATGPPLVGEFLTTEIRVQCSCQDFLNREGFNFYNLSVKQRYPYTSILNVDPGFFDGGPSASGRVSPSNDYPGYARTFGFIYLNKIYTIPSYEDAAVYSDPSLFYFQPKWCKHIYAAFWDMQRKFRLFNVTTSRLPQPNDEPLDEYYREKFEVDLAKQNSFLRREEDLVWWSRYSPSLGGLPKHLLYADKYNMIAKTLNFGQLDDLTELQDTNFQLFTINDFNPLNPAALPQETYDGGTYSDGVVITSSSNILDGGQYTNGELVPPSYPPTFINGGTY*
Ga0114968_1000008429	F010682	N/A	MVYTPLTNWRYDNSLYHRIQSGPQRTGDNLNLTDTYKVLSSGYMLPSGVQQTWFGVNLEGADFGLIPVGPPNISGYLNTEWRAVPPAISGYWTNYENTLPHASGLLDTYVGFRAQGRYSVAGRTVQTALGPQPGLKDFGTYTWFGASVPDNQNYDPFKTPNSNNPYEYDSDLGAFVGNGITGGPGSFQRVRYPALTNPTNDTSGSRAAWVYSPPVYCQVFTEAIRSDLPGQMSVVSRTSYRGKSTRYVPNYGSVYGVLGEGVRNMIRKVAG*
Ga0114968_1000008448	F048284	AGCAG	VFSQADYELAARVLGLPVPQTPAEMAAAAPITARVVREFGRGLPPMPGMEEEGMYTGATRSLNAYPNNTQPMLRAQLSSRLRTEPERPHEDNYLMELISQLDPEEFDLIMDLLVKLASQSDEHMDMLSSQRPAEYDTPNLGANYSMLNAPSSSHIPPSQEYQTLS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10000084

Overview

Ecosystem & Geography

Associated Families

Sequences