Scaffold Ga0114968_10000028

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000028
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 139071
• Total Scaffold Genes: 127
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 90 (70.87%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002434	Metagenome / Metatranscriptome	559	Y
F003080	Metagenome / Metatranscriptome	508	Y
F003268	Metagenome / Metatranscriptome	496	Y
F026214	Metagenome / Metatranscriptome	198	Y
F027425	Metagenome / Metatranscriptome	194	Y
F039012	Metagenome / Metatranscriptome	164	Y
F063400	Metagenome / Metatranscriptome	129	Y
F076076	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000002811	F063400	AGG	MASSFTLNRTQVEKLAKMAAHFKEVEWFTLEEVHTSGIGPSVTVKFNLFNDNDKDVDTTVDITDVSTW*
Ga0114968_10000028120	F076076	AGGAG	MPSLYGTTATGTSVNIDANARKLLGDGASGVGPYTSFGTPQLQALKIVSATINFTTTPTVAGSNLSLAVRGLQDMAEVYYVGKPTASGANQFIALVGITKTDSGNGYGASTSMDGSYENIEDSIRTALGTAEDDVTVTEVALTGLTFA*
Ga0114968_1000002817	F026214	GAGG	MARNYKDYSYFENRPDVVRVFDDLDAYLNYCRIELCDFNPADLYRKDSAIYQAYLNSKRPRRPYQGNKPRFEKRRNDNFSR*
Ga0114968_1000002821	F003080	GGAG	MNTAKDIADTLIHRAKNLQEFIVERDWALIPAGVVKYDIQHTVGEPARIFVHAMTQEEAERQVDDWFGESVE*
Ga0114968_1000002835	F003268	AGG	MSQNNIPSNLPSVERLIQRVAVAEKSQQKDIKLSLQEARDLTAELAIITAKLGKTVQEIHQMLSEIRESTTNIDVKFDGGTF*
Ga0114968_1000002869	F002434	N/A	MIAAFQEYFKWQDRFEYRGSDEAGIKARYWLSEIRNEASKRRTEIQAKREERKLARKGKPGRPPKITK*
Ga0114968_100000288	F027425	AGG	MIKGLTGTCGVTVSAGNTALPYVGPNTSNPMTGMMRINGTEIEVFNGSSWQQLSTSYATVSLDQDILDTVQWARKKRDEEMKWKSLANDNKAVKIALDNLEQARQQLELTTILAREYETTS*
Ga0114968_1000002884	F039012	N/A	MEIDFNRDFSNLRKQYGVWRKRFPMFTHDVDHIEHVIERHIQNFSIAGIHYRQTHSRTYLEKAQHELDEIDRVIAMVEKIELMAMLAR*