Scaffold Ga0114963_10089640

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10089640
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1892
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032162	Metagenome / Metatranscriptome	180	N
F043789	Metagenome / Metatranscriptome	155	Y
F056412	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_100896401	F056412	N/A	MKRKTKLEILLGNLDKASADLKKAVEESQKRLDESFAKYQHKVEVAHHNSMTINEKQIEEII*
Ga0114963_100896403	F032162	AGG	MKQNLKISYQTFGENNAYLLEGNLKQINHFFNSIYNWEGTNGKLHDMGNGKAFYFYAHPDDVKKALVKVALHSLVNKINAKGRKGGLLDLATTKAQSIIDEMTQTCFLWGATSSEGYSLGTITAEKPSDYCGAISSGRD*
Ga0114963_100896404	F043789	N/A	MKKKISKYEQLLANLNKAAQDLKVASTQAVATLEAHAEKIEAINQKYSEK*