Scaffold Ga0114963_10072068

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10072068
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2158
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003520	Metagenome / Metatranscriptome	481	Y
F007102	Metagenome / Metatranscriptome	357	N
F018367	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_100720684	F003520	AGG	MANNIAFQAQGKTYKANVTTSSQTITITADSPCNQLLVANHQPTGTGGQPVYFNVSSNSSVTATVPANNSPQYALVSVPGTIKSFTVPSQFSSANVYIAFIGEAASECYFTPGEGL*
Ga0114963_100720685	F018367	AGG	MIDFASAYQPWPNTEQKLILVCRVALPNEKYGANEFLDKDGRVCRWVLETKNDRPN*
Ga0114963_100720686	F007102	GGAG	MIDPISAFALAQGAIKGIQAAIKMGKDVQGITHDVMKFFDAKDAVAKEAVKDPKKKYSSDTSQAMSTVMQLHELNKAEEELKWHFINQGHSQLWSQILLERNSIVQKRKQQEILDEKARKNRKAEIDEAITMGLCVLVAAAIISLVAWGVIEMKGKF*